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T

target - Variable in class edu.claflin.finder.algo.jungutils.Predicates.InPredicate

target - Variable in class edu.claflin.finder.algo.jungutils.Predicates.IsEqualToPredicate

target - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge

terminalLogs - Variable in class edu.claflin.finder.log.LogUtil

The HashMap used for determining which of the logging outputs are logged to the terminal.

testFile(File) - Static method in class edu.claflin.finder.io.graph.SIFGraphIO

Tests to see if a File is a valid graph file.

testFile(File) - Static method in class edu.claflin.finder.io.graph.SimpleGraphIO

Tests to see if a File is a valid graph file.

toArray() - Method in class edu.claflin.finder.algo.jungutils.Pair

toArray(S[]) - Method in class edu.claflin.finder.algo.jungutils.Pair

toNumber(Object) - Method in class edu.claflin.finder.logic.comp.EdgeWeightComparator

Converts an unknown object into a BigDecimal if possible.

TOP - Static variable in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

toString() - Method in enum edu.claflin.finder.algo.ArgumentsBundle.COMMON_ARGS

toString() - Method in class edu.claflin.finder.algo.ArgumentsBundle

toString() - Method in class edu.claflin.finder.algo.BronKerbosch

toString() - Method in class edu.claflin.finder.algo.ConnectedComponentsDFS

toString() - Method in class edu.claflin.finder.algo.jungutils.AbstractGraph

toString() - Method in class edu.claflin.finder.algo.jungutils.BetweennessCentrality.BetweennessData

toString() - Method in class edu.claflin.finder.algo.jungutils.CommonPattern

toString() - Method in class edu.claflin.finder.algo.jungutils.Functions.ConstantFunction

toString() - Method in class edu.claflin.finder.algo.jungutils.Functions.ForMapWithDefault

toString() - Method in class edu.claflin.finder.algo.jungutils.Functions.FunctionComposition

toString() - Method in class edu.claflin.finder.algo.jungutils.Functions.FunctionForMapNoDefault

toString() - Method in enum edu.claflin.finder.algo.jungutils.Functions.IdentityFunction

toString() - Method in class edu.claflin.finder.algo.jungutils.Functions.PredicateFunction

toString() - Method in class edu.claflin.finder.algo.jungutils.Functions.SupplierFunction

toString() - Method in enum edu.claflin.finder.algo.jungutils.Functions.ToStringFunction

toString() - Method in class edu.claflin.finder.algo.jungutils.JdkPattern

toString() - Method in class edu.claflin.finder.algo.jungutils.Pair

toString() - Method in class edu.claflin.finder.algo.jungutils.Predicates.AndPredicate

toString() - Method in class edu.claflin.finder.algo.jungutils.Predicates.CompositionPredicate

toString() - Method in class edu.claflin.finder.algo.jungutils.Predicates.InPredicate

toString() - Method in class edu.claflin.finder.algo.jungutils.Predicates.InstanceOfPredicate

toString() - Method in class edu.claflin.finder.algo.jungutils.Predicates.IsEqualToPredicate

toString() - Method in class edu.claflin.finder.algo.jungutils.Predicates.NotPredicate

toString() - Method in class edu.claflin.finder.algo.jungutils.Predicates.OrPredicate

toString() - Method in class edu.claflin.finder.algo.jungutils.Predicates.SubtypeOfPredicate

toString() - Method in enum edu.claflin.finder.log.LogLevel

toString() - Method in enum edu.claflin.finder.log.LogType

Used to get a user friendly version of the LogType.

toString() - Method in class edu.claflin.finder.logic.communities.Communities

toString() - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

Gets an inorder String representation of the BinarySearchTree.

toString() - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.HeapNodeFG

toString() - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.IndexedHeapNode

toString() - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.IndexedHeapQueue

toString() - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

toString() - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.TreeNodeInfoFG

toString() - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.VectorValue

toString() - Method in class edu.claflin.finder.logic.communities.struct.TreeNode

toString() - Method in class edu.claflin.finder.logic.communities.struct.TreeNodeInfo

toString() - Method in class edu.claflin.finder.logic.communities.struct.walk_trap_struct.HeapNodeWT

toString() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperEdge

toString() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

toString() - Method in class edu.claflin.finder.logic.Edge

toString() - Method in class edu.claflin.finder.logic.Graph

Returns a String representation of the Graph.

toString() - Method in class edu.claflin.finder.logic.Node

toString() - Method in class edu.claflin.finder.struct.DisjointSet

toString(TreeNode<T>) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

Recursive implementation of inorder toString.

toStringFunction() - Static method in class edu.claflin.finder.algo.jungutils.Functions

ToStringFunction() - Constructor for enum edu.claflin.finder.algo.jungutils.Functions.ToStringFunction

toStringHelper(String, Iterable<?>) - Static method in class edu.claflin.finder.algo.jungutils.Predicates

toStringSorted() - Method in class edu.claflin.finder.logic.communities.Communities

transferEdgesContainingNodeFromGraph(Graph, Node) - Method in class edu.claflin.finder.logic.Graph

Adds all edges containing the input node from the input graph to this graph, provided that the other vertex is already within this graph.

transpose(int, int) - Method in class edu.claflin.finder.logic.Graph

Transposes the specified nodes.

transpose(Node, Node) - Method in class edu.claflin.finder.logic.Graph

Transposes the specified nodes.

transpose(String, String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

tree - Variable in class edu.claflin.finder.logic.cygrouper.CytogrouperMain

TreeNode<T extends TreeNodeInfo> - Class in edu.claflin.finder.logic.communities.struct

The basic unit of the BinarySearchTree.

TreeNode() - Constructor for class edu.claflin.finder.logic.communities.struct.TreeNode

TreeNode(T) - Constructor for class edu.claflin.finder.logic.communities.struct.TreeNode

Create an empty TreeNode.

TreeNode(T, TreeNode<T>, TreeNode<T>) - Constructor for class edu.claflin.finder.logic.communities.struct.TreeNode

TreeNodeInfo - Class in edu.claflin.finder.logic.communities.struct

TreeNodeInfo(int) - Constructor for class edu.claflin.finder.logic.communities.struct.TreeNodeInfo

TreeNodeInfoFG - Class in edu.claflin.finder.logic.communities.struct.fast_greedy_struct

TreeNodeInfoFG(int, double) - Constructor for class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.TreeNodeInfoFG

trees - Variable in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

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